STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2110Extracellular solute-binding protein; Identified by match to protein family HMM PF01547. (533 aa)    
Predicted Functional Partners:
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
       0.773
dacB
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Identified by similarity to SP:P39844; match to protein family HMM PF02113; match to protein family HMM PF07313; match to protein family HMM TIGR00666.
       0.762
FSU_0127
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF08279.
 
 
 
 0.701
FSU_2108
Conserved hypothetical protein; Identified by similarity to GB:CAE80300.1; match to protein family HMM PF01643.
       0.548
FSU_2610
Glycosyl hydrolase-like protein; Identified by similarity to GB:CAD86595.1; match to protein family HMM PF00754.
 
  
 0.506
FSU_0382
Cellulase; Identified by similarity to GB:AAC45377.1; match to protein family HMM PF03425.
 
  
 0.497
FSU_3023
Conserved hypothetical protein; Identified by similarity to PIR:H70859.
  
     0.491
FSU_2592
Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
 
   
 0.490
FSU_0816
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
     0.483
FSU_0196
Putative mannanase; Identified by similarity to SP:P51529; match to protein family HMM PF00150; match to protein family HMM PF02018; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
   
 0.443
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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