Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dacBD-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Identified by similarity to SP:P39844; match to protein family HMM PF02113; match to protein family HMM PF07313; match to protein family HMM TIGR00666. (715 aa)    
Predicted Functional Partners:
FSU_0252
Identified by match to protein family HMM PF00023.
 
 
 
 0.820
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
       0.764
FSU_2110
Extracellular solute-binding protein; Identified by match to protein family HMM PF01547.
       0.762
FSU_2250
Putative microcin immunity protein; Identified by similarity to SP:Q47511; match to protein family HMM PF02016.
 
  
 0.718
FSU_1695
Beta-lactamase; Identified by match to protein family HMM PF00144.
 
  
 0.692
FSU_0995
Putative penicillin-binding protein; Identified by similarity to SP:Q07868; match to protein family HMM PF00905; match to protein family HMM PF03793.
     
 0.675
FSU_2108
Conserved hypothetical protein; Identified by similarity to GB:CAE80300.1; match to protein family HMM PF01643.
       0.541
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
  0.537
FSU_2249
Identified by match to protein family HMM PF00933.
  
  
 0.535
FSU_0854
Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557.
     
 0.521
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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