STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2122Putative lipoprotein. (152 aa)    
Predicted Functional Partners:
FSU_2123
DNA-binding response regulator; Identified by similarity to SP:P33356; match to protein family HMM PF00072; match to protein family HMM PF04397.
       0.746
FSU_2121
carF domain protein; Identified by similarity to GB:AAD38234.1; match to protein family HMM PF03781.
       0.741
lepB
Signal peptidase I; Identified by similarity to SP:P00803; match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.
       0.722
FSU_2125
Putative lipoprotein.
       0.721
FSU_2126
Putative DnaQ family exonuclease/DinG family helicase; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.
       0.691
FSU_2120
FG-GAP repeat protein; Identified by match to protein family HMM PF01839.
       0.664
FSU_2119
Putative lipoprotein.
       0.427
FSU_2128
Hypothetical protein; Identified by glimmer; putative.
       0.424
FSU_2118
Putative lipoprotein.
       0.419
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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