STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2145Putative membrane protein; Identified by match to protein family HMM PF08305; overlaps another CDS with the same product name. (582 aa)    
Predicted Functional Partners:
FSU_2146
Putative membrane protein; Overlaps another CDS with the same product name.
       0.782
FSU_2144
Acyltransferase family protein.
       0.773
FSU_2147
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.656
FSU_2273
Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422.
  
     0.619
FSU_0286
Fimbriae-associated domain protein; Identified by similarity to GP:3929312.
  
     0.551
FSU_2143
Identified by match to protein family HMM PF01757.
       0.538
FSU_2052
Esterase D domain protein; Identified by similarity to PIR:S36781.
  
     0.535
FSU_2610
Glycosyl hydrolase-like protein; Identified by similarity to GB:CAD86595.1; match to protein family HMM PF00754.
  
     0.521
FSU_0167
Identified by similarity to SP:P35160; similarity to SP:P45523; match to protein family HMM PF00578; match to protein family HMM PF08534.
  
     0.481
FSU_2298
Acyltransferase family protein.
  
     0.477
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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