STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2147Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (249 aa)    
Predicted Functional Partners:
FSU_0504
PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.
   
 0.836
FSU_1305
Putative BatD protein.
 
 
 0.750
FSU_1454
BatB protein; Identified by similarity to GP:4838139; match to protein family HMM PF00092.
 
   
 0.740
FSU_1660
Conserved hypothetical protein; Identified by similarity to PIR:B87135; match to protein family HMM PF01882.
 
  
 0.712
FSU_2995
Adenylate/guanylate cyclase domain protein; Identified by match to protein family HMM PF00211; match to protein family HMM PF05226.
 
 
 0.705
FSU_1457
BatA protein; Identified by similarity to GB:AAD30858.1; match to protein family HMM PF00092.
 
   
 0.684
FSU_1306
Putative BatE protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
 0.680
FSU_2295
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
   
 0.674
FSU_2145
Putative membrane protein; Identified by match to protein family HMM PF08305; overlaps another CDS with the same product name.
 
     0.655
FSU_0820
Conserved domain protein; Identified by similarity to GB:AAB72118.1; match to protein family HMM TIGR02171.
  
     0.636
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.