STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2147Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (249 aa)    
Predicted Functional Partners:
FSU_1305
Putative BatD protein.
 
 
 0.755
FSU_1454
BatB protein; Identified by similarity to GP:4838139; match to protein family HMM PF00092.
 
   
 0.744
htpG
Heat shock protein HtpG; Molecular chaperone. Has ATPase activity.
   
 0.714
FSU_1660
Conserved hypothetical protein; Identified by similarity to PIR:B87135; match to protein family HMM PF01882.
 
  
 0.705
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.699
FSU_0252
Identified by match to protein family HMM PF00023.
 
 0.687
FSU_1306
Putative BatE protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
 0.685
FSU_1457
BatA protein; Identified by similarity to GB:AAD30858.1; match to protein family HMM PF00092.
 
   
 0.683
FSU_2145
Putative membrane protein; Identified by match to protein family HMM PF08305; overlaps another CDS with the same product name.
 
     0.656
FSU_0820
Conserved domain protein; Identified by similarity to GB:AAB72118.1; match to protein family HMM TIGR02171.
  
     0.636
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.