STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2159Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977. (384 aa)    
Predicted Functional Partners:
FSU_2156
Phosphoadenosine phosphosulfate reductase domain protein; Identified by match to protein family HMM PF01507.
   
 0.944
FSU_2158
Conserved hypothetical protein; Identified by similarity to GB:AAL94642.1.
 
     0.940
FSU_2157
Conserved hypothetical protein; Identified by similarity to GB:AAL94641.1.
 
     0.938
FSU_2160
Helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.
 
     0.798
sufC
FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.
 
  
 0.784
FSU_2161
Hypothetical protein; Identified by glimmer; putative.
       0.752
FSU_0949
FeS assembly protein SufD; Identified by similarity to SP:P77689; match to protein family HMM PF01458.
 
 
 0.736
sufB
FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.
 
 
 0.736
FSU_0744
Cysteine desulfurase auxiliary chain SufE; Identified by match to protein family HMM PF02657.
  
 
 0.495
FSU_2163
Conserved domain protein; Identified by similarity to GB:BAC62598.1.
 
  
 0.428
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.