Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| FSU_1294 | FSU_2165 | FSU_1294 | FSU_2165 | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Identified by match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. | 0.765 |
| FSU_1294 | dnaG | FSU_1294 | FSU_0947 | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.802 |
| FSU_1294 | nusA | FSU_1294 | FSU_2842 | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | N utilization substance protein A; Participates in both transcription termination and antitermination. | 0.500 |
| FSU_1294 | recG | FSU_1294 | FSU_1069 | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | ATP-dependent DNA helicase RecG; Identified by similarity to SP:Q54900; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01336; match to protein family HMM PF04851. | 0.572 |
| FSU_1294 | rpoB | FSU_1294 | FSU_1734 | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.840 |
| FSU_1294 | rpoC_1 | FSU_1294 | FSU_1450 | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.421 |
| FSU_1294 | rpoC_2 | FSU_1294 | FSU_1733 | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.421 |
| FSU_2163 | FSU_2164 | FSU_2163 | FSU_2164 | Conserved domain protein; Identified by similarity to GB:BAC62598.1. | Conserved hypothetical protein; Identified by similarity to GB:AAL94647.1. | 0.783 |
| FSU_2163 | FSU_2165 | FSU_2163 | FSU_2165 | Conserved domain protein; Identified by similarity to GB:BAC62598.1. | Identified by match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. | 0.777 |
| FSU_2164 | FSU_2163 | FSU_2164 | FSU_2163 | Conserved hypothetical protein; Identified by similarity to GB:AAL94647.1. | Conserved domain protein; Identified by similarity to GB:BAC62598.1. | 0.783 |
| FSU_2164 | FSU_2165 | FSU_2164 | FSU_2165 | Conserved hypothetical protein; Identified by similarity to GB:AAL94647.1. | Identified by match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. | 0.773 |
| FSU_2165 | FSU_1294 | FSU_2165 | FSU_1294 | Identified by match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.765 |
| FSU_2165 | FSU_2163 | FSU_2165 | FSU_2163 | Identified by match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. | Conserved domain protein; Identified by similarity to GB:BAC62598.1. | 0.777 |
| FSU_2165 | FSU_2164 | FSU_2165 | FSU_2164 | Identified by match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. | Conserved hypothetical protein; Identified by similarity to GB:AAL94647.1. | 0.773 |
| FSU_2165 | FSU_2363 | FSU_2165 | FSU_2363 | Identified by match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. | Putative membrane-associated zinc metalloprotease; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054. | 0.487 |
| FSU_2165 | dnaG | FSU_2165 | FSU_0947 | Identified by match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.716 |
| FSU_2165 | nusA | FSU_2165 | FSU_2842 | Identified by match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. | N utilization substance protein A; Participates in both transcription termination and antitermination. | 0.512 |
| FSU_2165 | recG | FSU_2165 | FSU_1069 | Identified by match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. | ATP-dependent DNA helicase RecG; Identified by similarity to SP:Q54900; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01336; match to protein family HMM PF04851. | 0.488 |
| FSU_2165 | rpoB | FSU_2165 | FSU_1734 | Identified by match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.810 |
| FSU_2165 | rpoC_1 | FSU_2165 | FSU_1450 | Identified by match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.421 |
page 1 of 3