STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2177Putative membrane protein. (789 aa)    
Predicted Functional Partners:
FSU_2238
Conserved hypothetical protein; Identified by similarity to GB:AAQ66279.1.
   
 0.849
FSU_0396
Conserved hypothetical protein; Identified by similarity to GB:AAQ66279.1.
   
 0.847
FSU_0398
Conserved hypothetical protein; Identified by similarity to GB:AAS12525.1.
 
     0.779
FSU_2239
Conserved hypothetical protein; Identified by similarity to GB:AAQ66278.1.
 
     0.779
FSU_2178
Putative membrane protein; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
       0.515
FSU_2179
Putative cobalt ABC transporter, permease protein; Identified by match to protein family HMM PF02361.
       0.480
FSU_1662
RelA/SpoT domain protein; Identified by match to protein family HMM PF04607.
  
     0.446
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.