STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2180Putative cobalt ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (506 aa)    
Predicted Functional Partners:
FSU_2179
Putative cobalt ABC transporter, permease protein; Identified by match to protein family HMM PF02361.
 
 
 0.963
FSU_2178
Putative membrane protein; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
 
     0.889
FSU_1690
Putative oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to PIR:H75068; match to protein family HMM PF00528.
 
  
 0.623
FSU_0511
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
  
0.599
FSU_1688
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
  
0.599
FSU_2240
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
     0.598
FSU_1689
Putative oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P24139; match to protein family HMM PF00528.
  
 0.593
FSU_2175
Heavy metal translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525.
  
     0.550
FSU_1559
Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
     0.540
FSU_2173
Flavodoxin; Identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753.
  
    0.437
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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