STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2187Conserved domain protein; Identified by similarity to GB:AAB72118.1; match to protein family HMM PF03781. (477 aa)    
Predicted Functional Partners:
FSU_2186
Putative membrane protein.
      0.952
FSU_2188
4-carboxymuconolactone decarboxylase domain protein; Identified by match to protein family HMM PF02627.
 
     0.864
FSU_2185
Hypothetical protein; Identified by glimmer; putative.
       0.741
FSU_0520
Putative protein kinase; Identified by match to protein family HMM PF00069.
 
 
  0.636
FSU_0011
Putative protein kinase; Identified by match to protein family HMM PF00069.
 
 
  0.587
nifJ
Pyruvate synthase; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
     
 0.532
FSU_0027
Hypothetical protein; Identified by glimmer; putative.
  
     0.496
FSU_2189
Hypothetical protein; Identified by glimmer; putative.
       0.415
FSU_0820
Conserved domain protein; Identified by similarity to GB:AAB72118.1; match to protein family HMM TIGR02171.
  
     0.406
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.