STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_21884-carboxymuconolactone decarboxylase domain protein; Identified by match to protein family HMM PF02627. (404 aa)    
Predicted Functional Partners:
FSU_2210
Conserved hypothetical protein; Identified by similarity to SP:Q01609.
    0.939
FSU_2328
Hydrolase, alpha/beta hydrolase fold family; Identified by match to protein family HMM PF00561.
  
 
 0.936
FSU_2187
Conserved domain protein; Identified by similarity to GB:AAB72118.1; match to protein family HMM PF03781.
 
     0.864
FSU_1194
Putative lipoprotein.
 
     0.760
FSU_1077
Conserved hypothetical protein; Identified by similarity to GB:AAN24294.1.
 
     0.758
FSU_2202
Conserved hypothetical protein; Identified by similarity to GB:AAM03856.1.
 
     0.755
FSU_2186
Putative membrane protein.
       0.749
FSU_2185
Hypothetical protein; Identified by glimmer; putative.
       0.741
FSU_2219
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
  
 0.616
FSU_2207
Putative lipoprotein.
 
     0.609
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.