STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2210Conserved hypothetical protein; Identified by similarity to SP:Q01609. (383 aa)    
Predicted Functional Partners:
FSU_2188
4-carboxymuconolactone decarboxylase domain protein; Identified by match to protein family HMM PF02627.
    0.939
FSU_2207
Putative lipoprotein.
 
    0.739
FSU_2208
Conserved hypothetical protein; Identified by similarity to GB:AAO77176.1.
       0.583
FSU_2329
Conserved domain protein; Identified by similarity to GB:BAC15296.1.
    
 0.583
FSU_2209
Hypothetical protein; Identified by glimmer; putative.
       0.578
FSU_1333
Putative lipoprotein.
   
    0.493
FSU_2219
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
    0.482
FSU_2392
Carbohydrate kinase, PfkB family; Identified by match to protein family HMM PF00294.
   
    0.446
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.