STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2216Putative type I restriction-modification system, R subunit; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463. (781 aa)    
Predicted Functional Partners:
FSU_2217
Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.
 
 
 0.959
FSU_2218
Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.
 
 
 0.939
FSU_1135
Putative type IIG restriction endonuclease and DNA modification methyltransferase; Possibly an isoschizomer of Hpy99ORF1365P found in Helicobacter pylori; identified by match to protein family HMM PF02384; match to protein family HMM PF07674.
 
 
 0.868
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.
  
 
 0.505
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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