Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2217Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420. (383 aa)    
Predicted Functional Partners:
FSU_2218
Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.
 
 0.990
FSU_2216
Putative type I restriction-modification system, R subunit; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.
 
 
 0.959
FSU_1135
Putative type IIG restriction endonuclease and DNA modification methyltransferase; Possibly an isoschizomer of Hpy99ORF1365P found in Helicobacter pylori; identified by match to protein family HMM PF02384; match to protein family HMM PF07674.
 
 
 0.954
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.
 
 
 0.926
hsdR
Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.711
FSU_2700
HrgA protein; Identified by similarity to GB:AAO31536.1; match to protein family HMM PF04373.
 
    0.692
FSU_3014
Conserved hypothetical protein; Identified by similarity to GB:AAR13137.1.
  
  
 0.648
hsdS
Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.
 
     0.518
FSU_0355
Conserved domain protein; Identified by similarity to GB:AAM39783.1.
  
    0.449
FSU_1756
Conserved hypothetical protein; Identified by similarity to GB:AAM31899.1.
  
    0.449
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
Server load: low (14%) [HD]