STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2218Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384. (481 aa)    
Predicted Functional Partners:
FSU_2217
Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.
 
 0.990
FSU_2216
Putative type I restriction-modification system, R subunit; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463.
 
 
 0.942
hsdS
Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.
 
 0.928
hsdR
Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
 
 0.726
FSU_3014
Conserved hypothetical protein; Identified by similarity to GB:AAR13137.1.
  
 
 0.726
FSU_0019
Identified by match to protein family HMM PF03747.
      0.651
FSU_2504
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.527
FSU_2883
Conserved hypothetical protein; Identified by similarity to PIR:G81669.
  
 
 0.527
FSU_2700
HrgA protein; Identified by similarity to GB:AAO31536.1; match to protein family HMM PF04373.
  
   0.454
FSU_2729
Conserved domain protein; Identified by similarity to PIR:G64575.
  
  
 0.402
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.