FSU_2225 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSU_2225

Conserved hypothetical protein; Identified by similarity to GB:BAC18705.1. (348 aa)

Predicted Functional Partners:

nuoBC

0.888

nuoF

0.837

nuoE

0.792

nuoG

0.780

nuoD_1

0.756

FSU_2642

0.683

FSU_0051

0.679

FSU_0592

0.626

FSU_2226

0.570

FSU_2223

0.491

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0051	FSU_0592	FSU_0051	FSU_0592	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	0.685
FSU_0051	FSU_2225	FSU_0051	FSU_2225	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	Conserved hypothetical protein; Identified by similarity to GB:BAC18705.1.	0.679
FSU_0051	FSU_2226	FSU_0051	FSU_2226	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	Conserved domain protein; Identified by similarity to PIR:C75569; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242.	0.560
FSU_0592	FSU_0051	FSU_0592	FSU_0051	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	0.685
FSU_0592	FSU_2225	FSU_0592	FSU_2225	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	Conserved hypothetical protein; Identified by similarity to GB:BAC18705.1.	0.626
FSU_0592	FSU_2226	FSU_0592	FSU_2226	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	Conserved domain protein; Identified by similarity to PIR:C75569; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242.	0.539
FSU_2223	FSU_2225	FSU_2223	FSU_2225	Putative membrane protein; Identified by match to protein family HMM PF02535.	Conserved hypothetical protein; Identified by similarity to GB:BAC18705.1.	0.491
FSU_2225	FSU_0051	FSU_2225	FSU_0051	Conserved hypothetical protein; Identified by similarity to GB:BAC18705.1.	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	0.679
FSU_2225	FSU_0592	FSU_2225	FSU_0592	Conserved hypothetical protein; Identified by similarity to GB:BAC18705.1.	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	0.626
FSU_2225	FSU_2223	FSU_2225	FSU_2223	Conserved hypothetical protein; Identified by similarity to GB:BAC18705.1.	Putative membrane protein; Identified by match to protein family HMM PF02535.	0.491
FSU_2225	FSU_2226	FSU_2225	FSU_2226	Conserved hypothetical protein; Identified by similarity to GB:BAC18705.1.	Conserved domain protein; Identified by similarity to PIR:C75569; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242.	0.570
FSU_2225	FSU_2642	FSU_2225	FSU_2642	Conserved hypothetical protein; Identified by similarity to GB:BAC18705.1.	Conserved hypothetical protein; Identified by similarity to PIR:AH0899.	0.683
FSU_2225	nuoBC	FSU_2225	FSU_2894	Conserved hypothetical protein; Identified by similarity to GB:BAC18705.1.	NADH-quinone oxidoreductase, B/C subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.	0.888
FSU_2225	nuoD_1	FSU_2225	FSU_2663	Conserved hypothetical protein; Identified by similarity to GB:BAC18705.1.	NADH-quinone oxidoreductase, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.	0.756
FSU_2225	nuoE	FSU_2225	FSU_2664	Conserved hypothetical protein; Identified by similarity to GB:BAC18705.1.	NADH-quinone oxidoreductase, E subunit; Identified by similarity to SP:P33601; match to protein family HMM PF01257.	0.792
FSU_2225	nuoF	FSU_2225	FSU_2665	Conserved hypothetical protein; Identified by similarity to GB:BAC18705.1.	NADH-quinone oxidoreductase, F subunit; Identified by similarity to SP:O07948; match to protein family HMM PF01512.	0.837
FSU_2225	nuoG	FSU_2225	FSU_2666	Conserved hypothetical protein; Identified by similarity to GB:BAC18705.1.	NADH-quinone oxidoreductase, G subunit; Identified by match to protein family HMM PF00111.	0.780
FSU_2226	FSU_0051	FSU_2226	FSU_0051	Conserved domain protein; Identified by similarity to PIR:C75569; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242.	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	0.560
FSU_2226	FSU_0592	FSU_2226	FSU_0592	Conserved domain protein; Identified by similarity to PIR:C75569; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242.	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	0.539
FSU_2226	FSU_2225	FSU_2226	FSU_2225	Conserved domain protein; Identified by similarity to PIR:C75569; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242.	Conserved hypothetical protein; Identified by similarity to GB:BAC18705.1.	0.570