STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2227ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463. (575 aa)    
Predicted Functional Partners:
FSU_1181
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
     
0.901
FSU_1486
Putative D-methionine transport ATP-binding protein metN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
 
     
0.884
FSU_2228
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
    
0.820
FSU_2179
Putative cobalt ABC transporter, permease protein; Identified by match to protein family HMM PF02361.
 
   
 0.754
FSU_0504
PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.
   
 0.752
FSU_2178
Putative membrane protein; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
 
     0.733
FSU_2240
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
  
 0.671
FSU_3272
Conserved domain protein; Identified by match to protein family HMM PF04685.
    
  0.632
FSU_3055
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
0.601
FSU_2327
Conserved hypothetical protein; Identified by similarity to GB:AAO35972.1.
  
     0.593
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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