STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2236Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472. (130 aa)    
Predicted Functional Partners:
FSU_2235
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
   0.943
FSU_2234
Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
  
 
 0.869
FSU_2238
Conserved hypothetical protein; Identified by similarity to GB:AAQ66279.1.
 
     0.822
FSU_2237
Putative transporter; Identified by similarity to GB:AAQ66280.1.
 
     0.802
FSU_1355
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
   0.800
FSU_0435
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
   0.799
FSU_0434
MotA/TolQ/ExbB proton channel family protein; Identified by similarity to OMNI:VC1547; match to protein family HMM PF01618.
 
   0.786
FSU_2400
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
   0.762
FSU_1356
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
   0.748
FSU_1354
Biopolymer transport protein, ExbD/TolR family; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
  
     0.656
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.