STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2237Putative transporter; Identified by similarity to GB:AAQ66280.1. (791 aa)    
Predicted Functional Partners:
FSU_2238
Conserved hypothetical protein; Identified by similarity to GB:AAQ66279.1.
   
 0.982
FSU_2239
Conserved hypothetical protein; Identified by similarity to GB:AAQ66278.1.
 
     0.898
FSU_0396
Conserved hypothetical protein; Identified by similarity to GB:AAQ66279.1.
   
 0.885
FSU_2236
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
 
     0.802
FSU_2235
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
     0.801
FSU_0398
Conserved hypothetical protein; Identified by similarity to GB:AAS12525.1.
 
     0.778
FSU_2234
Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
       0.773
FSU_2231
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
     0.576
FSU_1034
Conserved domain protein; Identified by similarity to GB:AAL95231.1.
  
     0.491
FSU_1662
RelA/SpoT domain protein; Identified by match to protein family HMM PF04607.
  
     0.468
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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