STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2249Identified by match to protein family HMM PF00933. (384 aa)    
Predicted Functional Partners:
FSU_1695
Beta-lactamase; Identified by match to protein family HMM PF00144.
 
 0.976
FSU_2250
Putative microcin immunity protein; Identified by similarity to SP:Q47511; match to protein family HMM PF02016.
   
 0.926
FSU_0513
Conserved hypothetical protein; Identified by similarity to GB:AAM23515.1; match to protein family HMM PF07075.
 
  0.907
FSU_3030
Putative chitinase; Identified by match to protein family HMM PF00704; Belongs to the glycosyl hydrolase 18 family.
     
 0.652
FSU_0248
Identified by match to protein family HMM PF00883; Belongs to the peptidase M17 family.
    
 0.647
FSU_0253
Putative membrane-bound lytic murein transglycosylase D; Identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476.
    
 0.583
FSU_2150
Glycosyl hydrolase/glycosyltransferase; Identified by match to protein family HMM PF00150; match to protein family HMM PF00535.
    
 0.571
FSU_0127
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF08279.
    
 0.569
dacB
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Identified by similarity to SP:P39844; match to protein family HMM PF02113; match to protein family HMM PF07313; match to protein family HMM TIGR00666.
  
  
 0.535
FSU_0162
Putative cellobiose/cellodextrin phosphorylase; Identified by similarity to GB:AAB95491.2; similarity to GB:AAC45511.1.
    
 0.481
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.