FSU_2259 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSU_2259

Putative lipoprotein; Identified by match to protein family HMM TIGR02145. (298 aa)

Predicted Functional Partners:

FSU_2258

0.762

FSU_2257

0.736

FSU_2260

0.541

FSU_2261

0.541

FSU_2256

0.441

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
FSU_2256	FSU_2257	Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254.	Fibrobacter succinogenes major paralogous domain protein; Identified by match to protein family HMM TIGR02145.	0.460
FSU_2256	FSU_2258	Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254.	Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145.	0.446
FSU_2256	FSU_2259	Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254.	Putative lipoprotein; Identified by match to protein family HMM TIGR02145.	0.441
FSU_2257	FSU_2256	Fibrobacter succinogenes major paralogous domain protein; Identified by match to protein family HMM TIGR02145.	Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254.	0.460
FSU_2257	FSU_2258	Fibrobacter succinogenes major paralogous domain protein; Identified by match to protein family HMM TIGR02145.	Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145.	0.746
FSU_2257	FSU_2259	Fibrobacter succinogenes major paralogous domain protein; Identified by match to protein family HMM TIGR02145.	Putative lipoprotein; Identified by match to protein family HMM TIGR02145.	0.736
FSU_2257	FSU_2260	Fibrobacter succinogenes major paralogous domain protein; Identified by match to protein family HMM TIGR02145.	Hypothetical protein; Identified by glimmer; putative.	0.517
FSU_2257	FSU_2261	Fibrobacter succinogenes major paralogous domain protein; Identified by match to protein family HMM TIGR02145.	Hypothetical protein; Identified by glimmer; putative.	0.517
FSU_2258	FSU_2256	Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145.	Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254.	0.446
FSU_2258	FSU_2257	Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145.	Fibrobacter succinogenes major paralogous domain protein; Identified by match to protein family HMM TIGR02145.	0.746
FSU_2258	FSU_2259	Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145.	Putative lipoprotein; Identified by match to protein family HMM TIGR02145.	0.762
FSU_2258	FSU_2260	Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145.	Hypothetical protein; Identified by glimmer; putative.	0.533
FSU_2258	FSU_2261	Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145.	Hypothetical protein; Identified by glimmer; putative.	0.533
FSU_2259	FSU_2256	Putative lipoprotein; Identified by match to protein family HMM TIGR02145.	Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254.	0.441
FSU_2259	FSU_2257	Putative lipoprotein; Identified by match to protein family HMM TIGR02145.	Fibrobacter succinogenes major paralogous domain protein; Identified by match to protein family HMM TIGR02145.	0.736
FSU_2259	FSU_2258	Putative lipoprotein; Identified by match to protein family HMM TIGR02145.	Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145.	0.762
FSU_2259	FSU_2260	Putative lipoprotein; Identified by match to protein family HMM TIGR02145.	Hypothetical protein; Identified by glimmer; putative.	0.541
FSU_2259	FSU_2261	Putative lipoprotein; Identified by match to protein family HMM TIGR02145.	Hypothetical protein; Identified by glimmer; putative.	0.541
FSU_2260	FSU_2257	Hypothetical protein; Identified by glimmer; putative.	Fibrobacter succinogenes major paralogous domain protein; Identified by match to protein family HMM TIGR02145.	0.517
FSU_2260	FSU_2258	Hypothetical protein; Identified by glimmer; putative.	Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145.	0.533