STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2263Putative endo-1,4-beta-xylanase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616. (740 aa)    
Predicted Functional Partners:
FSU_1340
Conserved hypothetical protein; Identified by match to protein family HMM PF07944.
     0.776
FSU_0145
Arabinosidase-like protein; Identified by similarity to GB:AAB03089.1.
 
     0.771
FSU_3045
Lipase/acylhydrolase, GDSL family; Identified by match to protein family HMM PF00657.
  
     0.771
FSU_2522
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616.
  
     0.770
FSU_3191
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616.
  
     0.770
FSU_3192
Glycosyl hydrolase, family 43; Identified by similarity to GB:CAA71485.1; match to protein family HMM PF04616.
  
     0.770
FSU_3044
Carbohydrate-binding protein, CBM 6 family; Identified by similarity to GB:AAM39473.1; match to protein family HMM PF03422.
  
     0.768
FSU_2518
Esterase domain protein; Identified by similarity to SP:Q00017.
  
     0.765
FSU_1195
Endo-1,4-beta-xylanase; Identified by similarity to SP:P10478; match to protein family HMM PF00331.
 
     0.764
FSU_1228
Putative cellulase; Identified by match to protein family HMM PF00150.
  
     0.763
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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