STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
FSU_2267Putative acetyl xylan esterase; Identified by similarity to GB:AAC14690.1; match to protein family HMM PF03422; match to protein family HMM PF03629. (552 aa)    
Predicted Functional Partners:
FSU_0145
Arabinosidase-like protein; Identified by similarity to GB:AAB03089.1.
  
     0.740
FSU_3044
Carbohydrate-binding protein, CBM 6 family; Identified by similarity to GB:AAM39473.1; match to protein family HMM PF03422.
  
 
  0.708
FSU_0613
Putative endoglucanase; Identified by match to protein family HMM PF01270.
  
     0.700
FSU_3190
Glycoside hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
  
     0.694
FSU_1340
Conserved hypothetical protein; Identified by match to protein family HMM PF07944.
  
     0.693
FSU_2521
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
  
     0.693
FSU_0889
Putative xylanase; Identified by similarity to GB:AAC27700.1; match to protein family HMM PF01270.
  
     0.690
FSU_2496
Identified by match to protein family HMM PF01522.
  
  
  0.682
FSU_2516
Putative pectate lyase; Identified by similarity to PIR:JC7271.
  
     0.682
FSU_0651
Putative xylanase; Identified by similarity to GB:AAC27700.1; match to protein family HMM PF01270.
  
     0.681
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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