STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2272Alpha-galactosidase; Identified by match to protein family HMM PF02065; match to protein family HMM PF03422. (630 aa)    
Predicted Functional Partners:
FSU_0315
Putative lactase; Identified by similarity to SP:P77989; match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.893
FSU_2288
Beta-galactosidase; Identified by similarity to PIR:T30551; match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929.
 
 
 0.889
FSU_2289
Carbohydrate binding protein, CMB family 6; Identified by similarity to GB:AAG02558.1; match to protein family HMM PF03422.
 
     0.758
FSU_2519
Carbohydrate-binding protein, CBM family 6; Identified by match to protein family HMM PF03422; match to protein family HMM PF07745.
 
  
 0.744
FSU_2517
Glycosyl hydrolase, family 43/carbohydrate binding module, family 6 domain protein; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
  
     0.715
FSU_1195
Endo-1,4-beta-xylanase; Identified by similarity to SP:P10478; match to protein family HMM PF00331.
  
  
  0.713
FSU_3030
Putative chitinase; Identified by match to protein family HMM PF00704; Belongs to the glycosyl hydrolase 18 family.
  
  
 0.709
FSU_2851
Glycosyl hydrolase, family 10; Identified by match to protein family HMM PF00331.
  
  
  0.707
FSU_2592
Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
  
  
 0.704
FSU_1115
Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.
  
   
 0.691
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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