STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2273Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422. (865 aa)    
Predicted Functional Partners:
FSU_2274
Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
 
    
0.783
FSU_2525
Conserved domain protein; Identified by similarity to GB:AAO79221.1.
  
     0.762
FSU_3044
Carbohydrate-binding protein, CBM 6 family; Identified by similarity to GB:AAM39473.1; match to protein family HMM PF03422.
  
     0.756
FSU_1114
Carbohydrate-binding protein, CBM 6 family; Identified by match to protein family HMM PF03422; match to protein family HMM PF09492; match to protein family HMM TIGR02474.
  
     0.753
FSU_2052
Esterase D domain protein; Identified by similarity to PIR:S36781.
  
 
   0.740
FSU_0145
Arabinosidase-like protein; Identified by similarity to GB:AAB03089.1.
  
     0.736
FSU_1115
Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.
  
     0.736
FSU_2289
Carbohydrate binding protein, CMB family 6; Identified by similarity to GB:AAG02558.1; match to protein family HMM PF03422.
 
     0.734
FSU_2610
Glycosyl hydrolase-like protein; Identified by similarity to GB:CAD86595.1; match to protein family HMM PF00754.
 
   
 0.731
FSU_0182
Glycosyl hydrolase family protein.
 
   
 0.715
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.