STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2288Beta-galactosidase; Identified by similarity to PIR:T30551; match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929. (1165 aa)    
Predicted Functional Partners:
FSU_2272
Alpha-galactosidase; Identified by match to protein family HMM PF02065; match to protein family HMM PF03422.
 
 
 0.889
FSU_2289
Carbohydrate binding protein, CMB family 6; Identified by similarity to GB:AAG02558.1; match to protein family HMM PF03422.
 
  
  0.819
FSU_2517
Glycosyl hydrolase, family 43/carbohydrate binding module, family 6 domain protein; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
 
  
  0.705
FSU_1340
Conserved hypothetical protein; Identified by match to protein family HMM PF07944.
 
     0.640
FSU_2520
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.614
axe6A
Acetyl xylan esterase AxeA; Identified by similarity to GB:AAC14690.1; match to protein family HMM PF03422; match to protein family HMM PF03629.
 
 
 0.601
FSU_2521
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.600
FSU_3190
Glycoside hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.592
FSU_2263
Putative endo-1,4-beta-xylanase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
 
  
  0.590
FSU_2262
Putative endo-1,4-beta-xylanase; Identified by similarity to SP:P45796; match to protein family HMM PF03422; match to protein family HMM PF04616.
 
  
  0.588
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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