STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2289Carbohydrate binding protein, CMB family 6; Identified by similarity to GB:AAG02558.1; match to protein family HMM PF03422. (999 aa)    
Predicted Functional Partners:
FSU_2269
Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
 
     0.840
FSU_2288
Beta-galactosidase; Identified by similarity to PIR:T30551; match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929.
 
     0.805
FSU_2518
Esterase domain protein; Identified by similarity to SP:Q00017.
  
 
   0.805
FSU_3045
Lipase/acylhydrolase, GDSL family; Identified by match to protein family HMM PF00657.
  
 
   0.803
FSU_3044
Carbohydrate-binding protein, CBM 6 family; Identified by similarity to GB:AAM39473.1; match to protein family HMM PF03422.
  
 
   0.794
FSU_2292
Xylanase XynD; Identified by similarity to GB:AAG36764.1; match to protein family HMM PF00331; match to protein family HMM PF03422.
 
     0.787
FSU_2520
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
     0.786
FSU_1340
Conserved hypothetical protein; Identified by match to protein family HMM PF07944.
  
     0.770
FSU_2521
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
     0.770
FSU_2517
Glycosyl hydrolase, family 43/carbohydrate binding module, family 6 domain protein; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
  
     0.766
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.