STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynEXylanase XynE; Identified by similarity to GB:AAG36765.1; match to protein family HMM PF00331; match to protein family HMM PF03422. (616 aa)    
Predicted Functional Partners:
FSU_3045
Lipase/acylhydrolase, GDSL family; Identified by match to protein family HMM PF00657.
  
 
  0.806
FSU_3044
Carbohydrate-binding protein, CBM 6 family; Identified by similarity to GB:AAM39473.1; match to protein family HMM PF03422.
  
 
  0.802
FSU_2361
Cellulase; Identified by similarity to GB:AAC41523.1; match to protein family HMM PF00759; match to protein family HMM PF02927.
 
 
   0.780
FSU_0451
Cellulase; Identified by similarity to GB:AAA68129.1; match to protein family HMM PF00759.
 
 
   0.779
FSU_2013
Cellulase; Identified by similarity to GB:AAC41523.1; match to protein family HMM PF00759; match to protein family HMM PF02927.
 
 
   0.778
FSU_2362
Cellulase; Identified by similarity to GB:AAC44386.1; match to protein family HMM PF00759; match to protein family HMM PF02927.
 
 
   0.778
FSU_2741
Putative xylanase; Identified by match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
     0.771
FSU_2866
BNR repeat protein; Identified by match to protein family HMM PF02012.
  
     0.771
FSU_2898
Putative lipoprotein.
 
     0.771
FSU_0577
Putative pectate lyase; Identified by match to protein family HMM PF00544.
  
     0.770
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.