Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2304Identified by match to protein family HMM PF01522. (419 aa)    
Predicted Functional Partners:
FSU_0816
Putative membrane protein; Identified by match to protein family HMM PF08305.
 
 
  0.828
FSU_1954
Conserved domain protein; Identified by similarity to GB:AAO52466.1; match to protein family HMM TIGR02148.
  
  
  0.794
FSU_1794
Conserved domain protein; Identified by similarity to GB:AAO52378.1; match to protein family HMM TIGR02148.
  
  
  0.788
FSU_1795
Conserved domain protein; Identified by similarity to GB:AAO52466.1; match to protein family HMM TIGR02148.
  
  
  0.787
FSU_3052
Fibro-slime domain protein; Identified by similarity to PIR:C95146; similarity to GB:BAB47241.1; match to protein family HMM TIGR02148.
  
  
  0.782
FSU_2502
Fibro-slime domain protein; Identified by match to protein family HMM TIGR02148.
  
  
  0.779
FSU_1953
Conserved domain protein; Identified by similarity to GB:CAD69025.1; match to protein family HMM TIGR02148.
  
     0.770
FSU_0738
Cellulase-like protein; Identified by similarity to GB:BAA12070.1.
  
    0.768
FSU_0809
Glycosyl hydrolase, family 9; Identified by similarity to SP:P26221; match to protein family HMM PF00759.
  
     0.768
FSU_0810
Glycosyl hydrolase, family 9; Identified by similarity to SP:P04954; match to protein family HMM PF00041; match to protein family HMM PF00759.
  
     0.766
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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