Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FSU_2327Conserved hypothetical protein; Identified by similarity to GB:AAO35972.1. (232 aa)    
Predicted Functional Partners:
FSU_2328
Hydrolase, alpha/beta hydrolase fold family; Identified by match to protein family HMM PF00561.
       0.746
FSU_1032
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
 
      0.629
FSU_0234
Putative methylated-DNA--protein-cysteine methyltransferase; Identified by similarity to OMNI:NTL02MA4212; match to protein family HMM PF01035; match to protein family HMM TIGR00589.
      0.624
FSU_2227
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463.
  
     0.593
FSU_2228
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
  
     0.535
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.
  
    0.448
FSU_2329
Conserved domain protein; Identified by similarity to GB:BAC15296.1.
       0.418
FSU_2330
Conserved domain protein; Identified by similarity to GB:AAQ95759.1.
       0.418
FSU_2331
Putative type III restriction-modification system, Mod subunit; Possibly an isoschizomer of M.NeuORF2309P found in Nitrosomonas europaea; identified by match to protein family HMM PF01555.
       0.416
FSU_1759
Conserved hypothetical protein; Identified by similarity to GB:AAO36877.1.
  
     0.413
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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