STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2330Conserved domain protein; Identified by similarity to GB:AAQ95759.1. (328 aa)    
Predicted Functional Partners:
FSU_2329
Conserved domain protein; Identified by similarity to GB:BAC15296.1.
       0.789
FSU_2331
Putative type III restriction-modification system, Mod subunit; Possibly an isoschizomer of M.NeuORF2309P found in Nitrosomonas europaea; identified by match to protein family HMM PF01555.
       0.768
FSU_2332
Type III restriction-modification system-like protein; Identified by similarity to SP:P08764; similarity to GB:CAD86218.1; match to protein family HMM PF04851.
       0.746
FSU_2328
Hydrolase, alpha/beta hydrolase fold family; Identified by match to protein family HMM PF00561.
       0.431
FSU_2327
Conserved hypothetical protein; Identified by similarity to GB:AAO35972.1.
       0.418
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.