Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2339Identified by match to protein family HMM PF04221; match to protein family HMM TIGR02384. (97 aa)    
Predicted Functional Partners:
FSU_0572
Conserved hypothetical protein TIGR00053; Identified by similarity to GB:AAM75239.1; match to protein family HMM PF05016; match to protein family HMM TIGR00053; match to protein family HMM TIGR02385.
 
 
 0.950
FSU_2338
Conserved hypothetical protein; Identified by similarity to GB:AAM25214.1; match to protein family HMM TIGR00305.
 
     0.816
FSU_0424
Identified by match to protein family HMM PF04221; match to protein family HMM TIGR02384.
  
     0.634
FSU_2340
Putative membrane protein.
       0.529
FSU_1081
Plasmid stabilization system family protein; Identified by match to protein family HMM PF05016.
   
   0.478
FSU_1759
Conserved hypothetical protein; Identified by similarity to GB:AAO36877.1.
  
     0.425
FSU_0191
Identified by similarity to GB:BAC90550.1; match to protein family HMM TIGR00305.
  
     0.423
FSU_2584
Hypothetical protein; Identified by glimmer; putative.
  
     0.409
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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