STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2357Conserved domain protein; Identified by match to protein family HMM PF03781. (579 aa)    
Predicted Functional Partners:
FSU_2356
Identified by match to protein family HMM PF00300.
      0.786
FSU_0027
Hypothetical protein; Identified by glimmer; putative.
  
     0.683
FSU_0820
Conserved domain protein; Identified by similarity to GB:AAB72118.1; match to protein family HMM TIGR02171.
  
     0.590
FSU_2358
Conserved domain protein; Identified by similarity to GB:AAN40837.1.
       0.572
FSU_0252
Identified by match to protein family HMM PF00023.
  
     0.480
FSU_3144
Putative lipoprotein, TIGR02171; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR02171.
  
     0.474
FSU_2995
Adenylate/guanylate cyclase domain protein; Identified by match to protein family HMM PF00211; match to protein family HMM PF05226.
  
  
  0.452
FSU_3157
Conserved domain protein; Identified by similarity to GB:AAD38234.1.
  
     0.434
FSU_2932
Cadherin domain protein; Identified by match to protein family HMM PF00028.
  
     0.430
FSU_3154
Conserved domain protein; Identified by similarity to GB:AAD38234.1.
  
     0.415
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.