STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2362Cellulase; Identified by similarity to GB:AAC44386.1; match to protein family HMM PF00759; match to protein family HMM PF02927. (665 aa)    
Predicted Functional Partners:
FSU_1685
Putative cellulase; Identified by match to protein family HMM PF00150.
  
  
 0.930
FSU_0162
Putative cellobiose/cellodextrin phosphorylase; Identified by similarity to GB:AAB95491.2; similarity to GB:AAC45511.1.
  
  
  0.926
FSU_2150
Glycosyl hydrolase/glycosyltransferase; Identified by match to protein family HMM PF00150; match to protein family HMM PF00535.
 
 
 0.920
FSU_2592
Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
  
  
 0.920
FSU_2914
Cellulase; Identified by similarity to GB:AAC49731.1; match to protein family HMM PF00150.
  
  
 0.878
FSU_2303
Glycosyl hydrolase, family 8; Identified by match to protein family HMM PF01270.
  
   
 0.792
FSU_0196
Putative mannanase; Identified by similarity to SP:P51529; match to protein family HMM PF00150; match to protein family HMM PF02018; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
   
 0.752
FSU_2294
Xylanase XynB; Identified by match to protein family HMM PF00331; match to protein family HMM PF03422.
 
   
 0.751
xynE
Xylanase XynE; Identified by similarity to GB:AAG36765.1; match to protein family HMM PF00331; match to protein family HMM PF03422.
 
   
 0.748
FSU_2851
Glycosyl hydrolase, family 10; Identified by match to protein family HMM PF00331.
 
   
 0.747
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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