STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_2363Putative membrane-associated zinc metalloprotease; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054. (460 aa)    
Predicted Functional Partners:
uppS
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
  
 0.774
cdsA
Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148.
  
  
 0.723
FSU_1973
Conserved hypothetical protein; Identified by similarity to GB:BAC59619.1.
 
  
 0.631
FSU_0630
Hypothetical protein; Identified by glimmer; putative.
  
  
 0.543
FSU_1071
Hypothetical protein; Identified by glimmer; putative.
  
  
 0.543
FSU_2654
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303.
  
  
 0.543
FSU_3056
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
  
  
 0.543
FSU_3123
Hypothetical protein; Identified by glimmer; putative.
  
  
 0.543
FSU_2655
Outer membrane protein, OmpH family; Identified by similarity to GB:AAD23980.1; match to protein family HMM PF03938.
  
  
 0.540
recG
ATP-dependent DNA helicase RecG; Identified by similarity to SP:Q54900; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01336; match to protein family HMM PF04851.
  
     0.523
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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