STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2384HAMP domain protein; Identified by match to protein family HMM PF00672; match to protein family HMM PF02743; match to protein family HMM PF07228. (630 aa)    
Predicted Functional Partners:
FSU_0789
ATPase domain protein.
 
 0.983
FSU_0788
Putative anti-anti-sigma factor; Identified by similarity to SP:P17903; match to protein family HMM PF01740; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.907
FSU_2998
Putative anti-sigma-B factor antagonist; Identified by similarity to SP:P17903; match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.902
FSU_0147
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
  
 0.837
FSU_0748
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
  
 0.760
FSU_2835
STAS domain protein; Identified by match to protein family HMM PF01740.
  
 
 0.608
FSU_0067
Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
  
 0.587
rpsU
Ribosomal protein S21; Identified by similarity to SP:P02379; match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family.
       0.516
thiH
Thiazole biosynthesis protein ThiH; Identified by similarity to SP:P30140; match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR02351.
   
    0.503
FSU_2467
Menaquinone biosynthesis protein, SCO4550 family; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03699.
   
    0.503
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.