STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2397Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (746 aa)    
Predicted Functional Partners:
FSU_2396
Identified by match to protein family HMM PF00691.
 
    0.934
FSU_2398
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
 
   
 0.900
FSU_2403
Identified by match to protein family HMM TIGR01352.
 
     0.854
FSU_2619
Putative lipoprotein, TIGR02171; Identified by match to protein family HMM TIGR02171.
 
  
 0.829
FSU_1244
Putative lipoprotein, TIGR02171; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR02171.
 
  
 0.828
FSU_3147
Conserved domain protein; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR02171.
 
  
 0.826
FSU_2402
Conserved hypothetical protein; Identified by similarity to GB:AAO22897.1.
 
  
 0.819
FSU_0784
Conserved domain protein; Identified by similarity to GB:CAD84813.1; match to protein family HMM PF07676.
 
    0.810
FSU_1669
Conserved domain protein; Identified by similarity to GB:AAB72118.1; match to protein family HMM TIGR02171.
  
    0.777
FSU_2368
Conserved domain protein; Identified by similarity to PIR:D83762; match to protein family HMM TIGR02171.
  
    0.777
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.