STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2398Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515. (1292 aa)    
Predicted Functional Partners:
FSU_1973
Conserved hypothetical protein; Identified by similarity to GB:BAC59619.1.
 
 
 0.910
FSU_2397
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
   
 0.900
FSU_2402
Conserved hypothetical protein; Identified by similarity to GB:AAO22897.1.
 
    0.885
FSU_2403
Identified by match to protein family HMM TIGR01352.
 
    0.885
FSU_2396
Identified by match to protein family HMM PF00691.
 
  
 0.872
FSU_1156
Hypothetical protein; Identified by glimmer; putative.
   
 
 0.844
FSU_1071
Hypothetical protein; Identified by glimmer; putative.
 
 
 0.839
lepB
Signal peptidase I; Identified by similarity to SP:P00803; match to protein family HMM PF00717; match to protein family HMM TIGR02227; Belongs to the peptidase S26 family.
 
  
 0.836
FSU_0288
Conserved hypothetical protein; Identified by similarity to GB:BAC95135.1.
   
 
 0.822
FSU_0850
Conserved domain protein; Identified by similarity to GB:AAB85960.1.
   
 
 0.822
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.