STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2402Conserved hypothetical protein; Identified by similarity to GB:AAO22897.1. (164 aa)    
Predicted Functional Partners:
FSU_2403
Identified by match to protein family HMM TIGR01352.
 
 
 0.972
FSU_2400
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
 
 0.945
FSU_2398
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
 
    0.885
FSU_2397
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
  
 0.821
FSU_2401
Hypothetical protein; Identified by glimmer; putative.
       0.786
FSU_2396
Identified by match to protein family HMM PF00691.
 
 
   0.747
FSU_3052
Fibro-slime domain protein; Identified by similarity to PIR:C95146; similarity to GB:BAB47241.1; match to protein family HMM TIGR02148.
  
     0.734
FSU_3037
Putative lipoprotein; Identified by match to protein family HMM TIGR02148.
  
     0.727
FSU_1794
Conserved domain protein; Identified by similarity to GB:AAO52378.1; match to protein family HMM TIGR02148.
  
     0.720
FSU_1795
Conserved domain protein; Identified by similarity to GB:AAO52466.1; match to protein family HMM TIGR02148.
  
     0.720
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.