Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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FSU_2410Putative rod shape-determining protein RodA; Identified by similarity to SP:P15035; match to protein family HMM PF01098; match to protein family HMM TIGR02210; Belongs to the SEDS family. (415 aa)    
Predicted Functional Partners:
mrdA
Penicillin-binding protein 2; Identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423.
 0.996
mreB
Rod shape-determining protein MreB; Identified by similarity to SP:P13519; match to protein family HMM PF06723; match to protein family HMM TIGR00904.
 
 
 0.940
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
  
 0.938
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
 
 0.903
FSU_0995
Putative penicillin-binding protein; Identified by similarity to SP:Q07868; match to protein family HMM PF00905; match to protein family HMM PF03793.
 0.895
FSU_0989
Putative cell division protein; Essential cell division protein.
  
 
 0.841
FSU_2408
Putative membrane protein; Identified by match to protein family HMM TIGR03426.
       0.790
FSU_0388
Putative UDP-N-acetylmuramate--alanine ligase murC; Identified by similarity to SP:P17952; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245.
 
  
 0.779
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.779
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; Identified by similarity to GB:AAG22121.1; match to protein family HMM PF00953.
 
  
 0.776
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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