FSU_2411 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSU_2411

comF family protein. (236 aa)

Predicted Functional Partners:

FSU_2828

0.869

radC

0.836

FSU_0799

0.812

FSU_0895

0.807

FSU_3129

0.800

FSU_1258

0.779

FSU_1271

0.746

FSU_0067

0.639

FSU_2413

0.628

FSU_1084

0.542

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0067	FSU_0895	FSU_0067	FSU_0895	Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.	0.405
FSU_0067	FSU_1084	FSU_0067	FSU_1084	Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	HDIG/GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM PF08495; match to protein family HMM TIGR00254; match to protein family HMM TIGR00277.	0.972
FSU_0067	FSU_1258	FSU_0067	FSU_1258	Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.	0.405
FSU_0067	FSU_2411	FSU_0067	FSU_2411	Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	comF family protein.	0.639
FSU_0067	FSU_2413	FSU_0067	FSU_2413	Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	HD/GAF domain protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF01966.	0.895
FSU_0067	FSU_2828	FSU_0067	FSU_2828	Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	DNA internalization competence protein ComEC/Rec2-like protein; Identified by similarity to SP:P39695; match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	0.448
FSU_0067	radC	FSU_0067	FSU_3076	Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	DNA repair protein RadC; Identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.	0.514
FSU_0799	FSU_0895	FSU_0799	FSU_0895	Mg chelatase-like protein; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368.	Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.	0.906
FSU_0799	FSU_1258	FSU_0799	FSU_1258	Mg chelatase-like protein; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368.	Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.	0.759
FSU_0799	FSU_2411	FSU_0799	FSU_2411	Mg chelatase-like protein; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368.	comF family protein.	0.812
FSU_0799	FSU_2828	FSU_0799	FSU_2828	Mg chelatase-like protein; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368.	DNA internalization competence protein ComEC/Rec2-like protein; Identified by similarity to SP:P39695; match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	0.637
FSU_0895	FSU_0067	FSU_0895	FSU_0067	Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.	Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.405
FSU_0895	FSU_0799	FSU_0895	FSU_0799	Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.	Mg chelatase-like protein; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368.	0.906
FSU_0895	FSU_1084	FSU_0895	FSU_1084	Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.	HDIG/GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM PF08495; match to protein family HMM TIGR00254; match to protein family HMM TIGR00277.	0.479
FSU_0895	FSU_2411	FSU_0895	FSU_2411	Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.	comF family protein.	0.807
FSU_0895	FSU_2828	FSU_0895	FSU_2828	Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.	DNA internalization competence protein ComEC/Rec2-like protein; Identified by similarity to SP:P39695; match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.	0.818
FSU_0895	radC	FSU_0895	FSU_3076	Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.	DNA repair protein RadC; Identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.	0.494
FSU_1084	FSU_0067	FSU_1084	FSU_0067	HDIG/GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM PF08495; match to protein family HMM TIGR00254; match to protein family HMM TIGR00277.	Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.972
FSU_1084	FSU_0895	FSU_1084	FSU_0895	HDIG/GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM PF08495; match to protein family HMM TIGR00254; match to protein family HMM TIGR00277.	Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.	0.479
FSU_1084	FSU_1258	FSU_1084	FSU_1258	HDIG/GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM PF08495; match to protein family HMM TIGR00254; match to protein family HMM TIGR00277.	Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.	0.479