Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FSU_2411comF family protein. (236 aa)    
Predicted Functional Partners:
FSU_2828
DNA internalization competence protein ComEC/Rec2-like protein; Identified by similarity to SP:P39695; match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
 
  
 0.873
FSU_3129
Prephenate dehydrogenase; Identified by similarity to SP:P20692; match to protein family HMM PF01842; match to protein family HMM PF02153.
  
    0.831
FSU_0799
Mg chelatase-like protein; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368.
 
  
 0.806
FSU_0895
Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.
 
 
 0.793
FSU_1258
Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.
 
 
 0.762
FSU_1271
Conserved hypothetical protein; Identified by similarity to GB:AAN24235.1.
  
    0.753
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.692
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
   
  
 0.692
radC
DNA repair protein RadC; Identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.
 
    0.648
FSU_0067
Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
    0.598
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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