Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_2416Identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM TIGR01934; Belongs to the class I-like SAM-binding methyltransferase superfamily. MenG/UbiE family. (245 aa)    
Predicted Functional Partners:
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
 
  
 0.842
FSU_1299
Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
 
 0.632
FSU_2418
Putative 4-hydroxybenzoate polyprenyltransferase; Identified by match to protein family HMM PF01040; match to protein family HMM TIGR01475; Belongs to the UbiA prenyltransferase family.
    
 0.608
FSU_0051
acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.
    
 0.560
FSU_0592
acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.
     
 0.539
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.521
FSU_2415
Putative lipoprotein; Identified by match to protein family HMM PF08757.
       0.504
FSU_2419
Hypothetical protein; Identified by glimmer; putative.
       0.491
bioA
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Identified by match to protein family HMM PF00202; match to protein family HMM TIGR00508; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.461
FSU_2226
Conserved domain protein; Identified by similarity to PIR:C75569; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242.
  
     0.459
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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