Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ubiX3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (188 aa)    
Predicted Functional Partners:
FSU_1152
Identified by match to protein family HMM PF01977; Belongs to the UbiD family.
 
 
 0.960
FSU_2418
Putative 4-hydroxybenzoate polyprenyltransferase; Identified by match to protein family HMM PF01040; match to protein family HMM TIGR01475; Belongs to the UbiA prenyltransferase family.
 
  
 0.921
FSU_2416
Identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM TIGR01934; Belongs to the class I-like SAM-binding methyltransferase superfamily. MenG/UbiE family.
 
  
 0.842
ald
Aldehyde dehydrogenase; Identified by similarity to SP:P46329; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
    
 0.530
FSU_1371
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
     
 0.514
FSU_2415
Putative lipoprotein; Identified by match to protein family HMM PF08757.
       0.504
FSU_2738
Flavin reductase domain protein.
    
  0.498
FSU_2419
Hypothetical protein; Identified by glimmer; putative.
       0.491
FSU_0444
Prenyltransferase, UbiA family; Identified by match to protein family HMM PF01040.
    
 0.489
FSU_0925
Hydrolase, NUDIX family; Identified by similarity to GP:28272372; match to protein family HMM PF00293; match to protein family HMM PF09297.
     
  0.483
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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