FSU_2469 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSU_2469

ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (468 aa)

Predicted Functional Partners:

ilvC

0.735

crcB

0.701

FSU_1541

0.567

FSU_2468

0.519

FSU_1555

0.498

cysT

0.483

cysA

0.483

FSU_2471

0.475

FSU_2472

0.475

FSU_2267

0.460

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_1541	FSU_2469	FSU_1541	FSU_2469	ABC transporter, ATP-binding protein; Identified by similarity to SP:P38046; match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.567
FSU_1541	cysA	FSU_1541	FSU_0555	ABC transporter, ATP-binding protein; Identified by similarity to SP:P38046; match to protein family HMM PF00005.	Sulfate ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family.	0.467
FSU_1541	cysT	FSU_1541	FSU_0553	ABC transporter, ATP-binding protein; Identified by similarity to SP:P38046; match to protein family HMM PF00005.	Sulfate ABC transporter, permease protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import.	0.728
FSU_1555	FSU_2469	FSU_1555	FSU_2469	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.498
FSU_1555	cysA	FSU_1555	FSU_0555	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Sulfate ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family.	0.448
FSU_1555	cysT	FSU_1555	FSU_0553	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Sulfate ABC transporter, permease protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import.	0.680
FSU_2267	FSU_2468	FSU_2267	FSU_2468	Putative acetyl xylan esterase; Identified by similarity to GB:AAC14690.1; match to protein family HMM PF03422; match to protein family HMM PF03629.	Esterase domain protein; Identified by similarity to GB:CAC85738.1.	0.421
FSU_2267	FSU_2469	FSU_2267	FSU_2469	Putative acetyl xylan esterase; Identified by similarity to GB:AAC14690.1; match to protein family HMM PF03422; match to protein family HMM PF03629.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.460
FSU_2468	FSU_2267	FSU_2468	FSU_2267	Esterase domain protein; Identified by similarity to GB:CAC85738.1.	Putative acetyl xylan esterase; Identified by similarity to GB:AAC14690.1; match to protein family HMM PF03422; match to protein family HMM PF03629.	0.421
FSU_2468	FSU_2469	FSU_2468	FSU_2469	Esterase domain protein; Identified by similarity to GB:CAC85738.1.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.519
FSU_2468	crcB	FSU_2468	FSU_2470	Esterase domain protein; Identified by similarity to GB:CAC85738.1.	crcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.	0.476
FSU_2469	FSU_1541	FSU_2469	FSU_1541	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by similarity to SP:P38046; match to protein family HMM PF00005.	0.567
FSU_2469	FSU_1555	FSU_2469	FSU_1555	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.498
FSU_2469	FSU_2267	FSU_2469	FSU_2267	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Putative acetyl xylan esterase; Identified by similarity to GB:AAC14690.1; match to protein family HMM PF03422; match to protein family HMM PF03629.	0.460
FSU_2469	FSU_2468	FSU_2469	FSU_2468	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Esterase domain protein; Identified by similarity to GB:CAC85738.1.	0.519
FSU_2469	FSU_2471	FSU_2469	FSU_2471	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ATP-binding protein, Mrp/Nbp35 family; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	0.475
FSU_2469	FSU_2472	FSU_2469	FSU_2472	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Conserved hypothetical protein; Identified by similarity to PIR:E83358.	0.475
FSU_2469	crcB	FSU_2469	FSU_2470	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	crcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.	0.701
FSU_2469	cysA	FSU_2469	FSU_0555	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Sulfate ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family.	0.483
FSU_2469	cysT	FSU_2469	FSU_0553	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Sulfate ABC transporter, permease protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import.	0.483