STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2472Conserved hypothetical protein; Identified by similarity to PIR:E83358. (98 aa)    
Predicted Functional Partners:
FSU_2471
ATP-binding protein, Mrp/Nbp35 family; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.780
FSU_2473
RNA polymerase sigma-70 factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
  
    0.597
FSU_2474
Hypothetical protein; Identified by glimmer; putative.
       0.580
FSU_2475
Hypothetical protein; Identified by glimmer; putative.
       0.580
rlpA
Rare lipoprotein A family protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
       0.580
FSU_0343
Conserved domain protein; Identified by similarity to GB:AAP04919.1; overlaps another CDS with the same product name.
  
     0.568
crcB
crcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.512
FSU_2469
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.477
FSU_2477
Hypothetical protein; Identified by glimmer; putative.
       0.406
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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