STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rlpARare lipoprotein A family protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (141 aa)    
Predicted Functional Partners:
FSU_2475
Hypothetical protein; Identified by glimmer; putative.
     
 0.786
FSU_2474
Hypothetical protein; Identified by glimmer; putative.
   
   0.778
FSU_2473
RNA polymerase sigma-70 factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
       0.752
FSU_2471
ATP-binding protein, Mrp/Nbp35 family; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.580
FSU_2472
Conserved hypothetical protein; Identified by similarity to PIR:E83358.
       0.580
FSU_0764
Identified by match to protein family HMM PF01520.
  
 
 0.568
FSU_2477
Hypothetical protein; Identified by glimmer; putative.
       0.523
FSU_1367
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447; match to protein family HMM PF07676.
  
 
 0.412
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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