STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2501GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254. (293 aa)    
Predicted Functional Partners:
FSU_0748
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
  
 0.912
FSU_0067
Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 
 0.900
FSU_1636
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
  
 0.849
FSU_0525
EAL/GGDEF domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
  
 0.830
FSU_1666
GGDEF/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990.
 
  
 0.830
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:P39812; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
   
   0.824
FSU_1084
HDIG/GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM PF08495; match to protein family HMM TIGR00254; match to protein family HMM TIGR00277.
 
  
 0.821
FSU_0964
Putative bacterial type II/III secretion system protein; Identified by similarity to SP:P03666; match to protein family HMM PF00263; match to protein family HMM PF03958.
  
  
 0.809
FSU_2241
GGDEF/HAMP/Cache domain protein; Identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM PF02743; match to protein family HMM TIGR00254.
 
  
 0.801
FSU_2564
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
  
 0.785
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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