STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2528Rhamnogalacturonan lyase; Identified by similarity to GB:AAK20911.1; match to protein family HMM PF01839. (744 aa)    
Predicted Functional Partners:
FSU_2518
Esterase domain protein; Identified by similarity to SP:Q00017.
 
   0.980
FSU_3045
Lipase/acylhydrolase, GDSL family; Identified by match to protein family HMM PF00657.
   0.980
FSU_2516
Putative pectate lyase; Identified by similarity to PIR:JC7271.
 
 
   0.855
FSU_3044
Carbohydrate-binding protein, CBM 6 family; Identified by similarity to GB:AAM39473.1; match to protein family HMM PF03422.
 
   0.799
FSU_2269
Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
  
    0.767
FSU_2274
Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
  
    0.767
FSU_2520
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
  
    0.765
FSU_0192
Putative xylanase; Identified by similarity to SP:P45796; match to protein family HMM PF03422; match to protein family HMM PF04616.
  
    0.760
FSU_3190
Glycoside hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
  
    0.758
FSU_2263
Putative endo-1,4-beta-xylanase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
  
    0.757
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.