Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_2529Hypothetical protein; Identified by glimmer; putative. (796 aa)    
Predicted Functional Partners:
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 0.927
FSU_2018
Conserved domain protein; Identified by similarity to PIR:G72204; match to protein family HMM PF02922.
  
 0.927
glgP
Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 0.916
FSU_0710
Carbohydrate kinase, FGGY family; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; Belongs to the FGGY kinase family.
   
   0.728
FSU_2595
Glycogen synthase-like protein; Identified by similarity to SP:P39125; match to protein family HMM PF08323.
    
 0.541
axe6A
Acetyl xylan esterase AxeA; Identified by similarity to GB:AAC14690.1; match to protein family HMM PF03422; match to protein family HMM PF03629.
    
  0.518
FSU_2530
Hypothetical protein; Identified by glimmer; putative.
       0.498
FSU_2528
Rhamnogalacturonan lyase; Identified by similarity to GB:AAK20911.1; match to protein family HMM PF01839.
     
 0.469
FSU_0643
Identified by match to protein family HMM PF01704.
   
 
 0.460
FSU_1304
Putative 4-alpha-glucanotransferase; Identified by match to protein family HMM PF02446.
    
 0.449
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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