STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2546Hypothetical protein; Identified by glimmer; putative. (1682 aa)    
Predicted Functional Partners:
FSU_1954
Conserved domain protein; Identified by similarity to GB:AAO52466.1; match to protein family HMM TIGR02148.
  
   0.626
FSU_2547
Anion transporter; Identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM TIGR00785.
       0.623
FSU_1953
Conserved domain protein; Identified by similarity to GB:CAD69025.1; match to protein family HMM TIGR02148.
  
  
  0.622
FSU_1795
Conserved domain protein; Identified by similarity to GB:AAO52466.1; match to protein family HMM TIGR02148.
  
   0.593
FSU_1339
Conserved domain protein; Identified by similarity to PIR:AF1772; match to protein family HMM TIGR02543.
  
     0.582
FSU_0307
Internalin domain protein; Identified by similarity to SP:P25146; match to protein family HMM PF09479; match to protein family HMM TIGR02543.
  
     0.579
FSU_2397
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.574
FSU_1794
Conserved domain protein; Identified by similarity to GB:AAO52378.1; match to protein family HMM TIGR02148.
  
   0.570
FSU_2398
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
     0.570
FSU_3182
Conserved domain protein; Identified by similarity to GB:AAO77788.1.
  
 
   0.565
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.